PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g05420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 407aa    MW: 45593 Da    PI: 6.9397
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g05420genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000611738223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 C  C++ F++   L  H+r+H
  CA01g05420 17 YCRVCKRGFNSAGALGGHMRSH 38
                5********************9 PP

2zf-C2H210.80.0015158180123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k+F+++  L  H  +H
  CA01g05420 158 FQCKACKKVFNSHQALGGHRASH 180
                 89**************9999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.1821643IPR007087Zinc finger, C2H2
SMARTSM003550.0631638IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
PfamPF139124.7E-51838IPR007087Zinc finger, C2H2
SuperFamilySSF576676.62E-7157180No hitNo description
PROSITE profilePS5015710.014158185IPR007087Zinc finger, C2H2
PfamPF139125.7E-9158182IPR007087Zinc finger, C2H2
SMARTSM003550.073158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
SuperFamilySSF576676.62E-7241268No hitNo description
PfamPF139129.9E-12245269IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328246268IPR007087Zinc finger, C2H2
SMARTSM003550.11246268IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280248268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MSENNGQKSE PSSVILYCRV CKRGFNSAGA LGGHMRSHGA AGENNNRNYG EQVSEPKYTI  60
NNFRRDKSES QKHSYNLRTN SNRLVAGNNR STSDDRVDVE KSEYYYGRDG KEKQHSSREE  120
EDLANCLVML SSKSCDLSDD NNNSESRNKA KEVEKGMFQC KACKKVFNSH QALGGHRASH  180
KKVKGCYAAK LDVDDDDTTN SNNDDNDIDE DLMISTGDLI LHQESNSSQS QSPSSSSFSR  240
KRSRVHQCSI CQRVFSSGQA LGGHKRCHWL TSSIPETTFI PSFQEIQYHN QEQVLYNKPI  300
FTNHHQPLDL NFPAQLGNPA EVGLKLHSNP FEQESPKSSL QLWTDQQVDI NQNENQNHKC  360
KYSLSREEDI KSKEAKLSNL KDVNLDGGSS WLQIGIGPTP DILPTL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553474.10.0PREDICTED: zinc finger protein ZAT2-like
TrEMBLK4C3020.0K4C302_SOLLC; Uncharacterized protein
STRINGSolyc06g005180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.15e-24C2H2-like zinc finger protein